For our CLIMB tutorial you will find these tools installed in /shared/team/conda/telatin.mmb-dtp/qc

SeqFu

URL	github.com/telatin/seqfu2
Conda	conda install -c conda-forge -c bioconda seqfu
Description	General-purpose toolkit for FASTQ/FASTA manipulation, statistics, and quality inspection

FastQC

URL	bioinformatics.babraham.ac.uk/projects/fastqc
Conda	conda install -c bioconda fastqc
Description	Quality control reports for raw Illumina sequencing reads

fastp

URL	github.com/OpenGene/fastp
Conda	conda install -c bioconda fastp
Description	Fast all-in-one preprocessing and QC for Illumina FASTQ files (trimming, filtering, adapter removal)

fastplong

URL	github.com/OpenGene/fastplong
Conda	conda install -c bioconda fastplong
Description	Preprocessing and QC for long-read sequencing data (ONT/PacBio), analogous to fastp

NanoPlot

URL	github.com/wdecoster/NanoPlot
Conda	conda install -c bioconda nanoplot
Description	Plotting and statistics for Oxford Nanopore sequencing data

Kraken2

URL	github.com/DerrickWood/kraken2
Conda	conda install -c bioconda kraken2
Description	Taxonomic classification of sequencing reads using k-mer matching against a reference database

MultiQC

URL	multiqc.info
Conda	conda install -c bioconda multiqc
Description	Aggregates QC reports from multiple tools and samples into a single interactive HTML report

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