about
UNIX
sequencing
sequence-analysis
comparative-genomics
metagenomics
functional-analysis
Previous module:
about
Week 1: UNIX and the Command Line
Last year programme
Monday - Session 1
Monday - Session 2
Monday - Session 3
Tuesday - Session 1
Tuesday - Session 2
Tuesday - Session 3
Thursday - Session 1
Thursday - Session 2
Thursday - Session 3
Friday - Session 1
Next module:
sequencing
Instructors
Sam Haynes (Sam.Haynes@quadram.ac.uk)
Judit Talas (Judit.Talas@quadram.ac.uk)
Schedule
Day
Date
Time
Location
Monday
12/10/2026
9am-5pm
UG55A
Tuesday
13/10/2026
9am-5pm
UG55C
Thursday
15/10/2026
9am-5pm
UG44B
Friday
16/10/2026
9am-1pm
UG55A
Programme
Bash first steps: typing commands on your terminal
Filesystem and paths: where are files and how to access them
Redirectors and wildcards, extracting data from text files using shell commands
Introduction to Conda/Mamba; introduction to JupyterHub
Advanced topics: Variables and for loops; introduction to scripting; the PATH, startup files and aliases
Next submodule:
Last year programme